LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
ABHD14A-ACY1
hsa-miR-34c-5p
0.447
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: NR_037192.1
Biotype: sense
Gene id: NR_037192.1 (gene)
Gene Name: ABHD14A-ACY1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:51989008-51989036
exon
HITS-CLIP
DIRECT
LncBasev2
AC000089.3
hsa-miR-34c-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000424559
Biotype: processed_pseudogene
Gene id: ENSG00000235776
Gene Name: AC000089.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
22:19792782-19792810
exon
HITS-CLIP
DIRECT
LncBasev2
AC007246.3
hsa-miR-34c-5p
0.387
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000446698
Biotype: antisense
Gene id: ENSG00000231312
Gene Name: AC007246.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
2:39624206-39624234
exon
HITS-CLIP
DIRECT
LncBasev2
AC010761.6
hsa-miR-34c-5p
0.626
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000584779
Biotype: antisense
Gene id: ENSG00000265073
Gene Name: AC010761.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
17:28742496-28742524
exon
HITS-CLIP
DIRECT
LncBasev2
AC083884.8
hsa-miR-34c-5p
0.437
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000619652
Biotype: retained_intron
Gene id: ENSG00000232729
Gene Name: AC083884.8
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
7:74726611-74726639
exon
HITS-CLIP
DIRECT
LncBasev2
AC087294.2
hsa-miR-34c-5p
0.379
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000580291
Biotype: antisense
Gene id: ENSG00000235530
Gene Name: AC087294.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
17:21218205-21218233
exon
HITS-CLIP
DIRECT
LncBasev2
AP001429.1
hsa-miR-34c-5p
0.524
mTTBlnPmP
IP

Gene Details
Chromosome: 21
Transcript: ENST00000602568
Biotype: sense_intronic
Gene id: ENSG00000270116
Gene Name: AP001429.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
21:37101182-37101210
exon
HITS-CLIP
DIRECT
LncBasev2
AP006621.8
hsa-miR-34c-5p
0.412
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000532946
Biotype: antisense
Gene id: ENSG00000255108
Gene Name: AP006621.8
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
11:823766-823794
exon
HITS-CLIP
DIRECT
LncBasev2
BMS1P8
hsa-miR-34c-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000567036
Biotype: processed_transcript
Gene id: ENSG00000260518
Gene Name: BMS1P8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
16:33687079-33687107
exon
HITS-CLIP
DIRECT
LncBasev2
C1orf132
hsa-miR-34c-5p
0.779
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:207812508-207812536
exon
HITS-CLIP
DIRECT
LncBasev2
C1orf220
hsa-miR-34c-5p
0.369
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000521244
Biotype: lincRNA
Gene id: ENSG00000213057
Gene Name: C1orf220
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:178545566-178545594
exon
HITS-CLIP
DIRECT
LncBasev2
CTA-280A3.2
hsa-miR-34c-5p
0.860
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000623760
Biotype: lincRNA
Gene id: ENSG00000279712
Gene Name: CTA-280A3.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
22:47919045-47919073
exon
HITS-CLIP
DIRECT
LncBasev2
CTB-31N19.3
hsa-miR-34c-5p
0.388
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000564271
Biotype: sense_intronic
Gene id: ENSG00000261596
Gene Name: CTB-31N19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
16:21626997-21627025
exon
HITS-CLIP
DIRECT
LncBasev2
CTC-548K16.6
hsa-miR-34c-5p
0.381
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: ENST00000589702
Biotype: sense_intronic
Gene id: ENSG00000267474
Gene Name: CTC-548K16.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
19:14458688-14458716
exon
HITS-CLIP
DIRECT
LncBasev2
CTD-2228K2.7
hsa-miR-34c-5p
0.584
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000534918
Biotype: retained_intron
Gene id: ENSG00000225138
Gene Name: CTD-2228K2.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
5:479430-479458
exon
HITS-CLIP
DIRECT
LncBasev2
5:479163-479191
exon
HITS-CLIP
DIRECT
LncBasev2
5:479163-479191
exon
HITS-CLIP
DIRECT
LncBasev2
5:479163-479203
exon
HITS-CLIP
DIRECT
LncBasev2
5:479430-479458
exon
HITS-CLIP
DIRECT
LncBasev2
5:478319-478347
exon
HITS-CLIP
DIRECT
LncBasev2
5:479163-479203
exon
HITS-CLIP
DIRECT
LncBasev2
CTD-2228K2.7
hsa-miR-34c-5p
0.371
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000606319
Biotype: antisense
Gene id: ENSG00000225138
Gene Name: CTD-2228K2.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
5:476125-476153
exon
HITS-CLIP
DIRECT
LncBasev2
CTD-2530N21.5
hsa-miR-34c-5p
0.367
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000619681
Biotype: sense_overlapping
Gene id: ENSG00000177725
Gene Name: CTD-2530N21.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
8:22170146-22170174
exon
HITS-CLIP
DIRECT
LncBasev2
DYNC1I2P1
hsa-miR-34c-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000435916
Biotype: processed_pseudogene
Gene id: ENSG00000225137
Gene Name: DYNC1I2P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:50265865-50265893
exon
HITS-CLIP
DIRECT
LncBasev2
DYX1C1-CCPG1
hsa-miR-34c-5p
0.379
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000565113
Biotype: processed_transcript
Gene id: ENSG00000261771
Gene Name: DYX1C1-CCPG1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HMSC
IP
Tested Cell Line: HMSC
Category: Stem/Progenitor
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:55371976-55372004
exon
HITS-CLIP
DIRECT
LncBasev2
FAM211A-AS1
hsa-miR-34c-5p
0.410
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: NR_027160.1
Biotype: antisense
Gene id: NR_027160.1 (gene)
Gene Name: FAM211A-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
17:16441778-16441806
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:16441778-16441806
exon
HITS-CLIP
DIRECT
LncBasev2
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